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Computational insight into nitration of human myoglobin

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成果类型:
期刊论文
作者:
Lin, Ying-Wu*;Shu, Xiao-Gang;Du, Ke-Jie;Nie, Chang-Ming;Wen, Ge-Bo
通讯作者:
Lin, Ying-Wu
作者机构:
[Nie, Chang-Ming; Shu, Xiao-Gang; Lin, Ying-Wu; Du, Ke-Jie] Univ South China, Sch Chem & Chem Engn, Hengyang 421001, Peoples R China.
[Wen, Ge-Bo; Lin, Ying-Wu] Univ South China, Lab Prot Struct & Funct, Hengyang 421001, Peoples R China.
通讯机构:
[Lin, Ying-Wu] U
Univ South China, Sch Chem & Chem Engn, Hengyang 421001, Peoples R China.
语种:
英文
关键词:
Heme active site;Heme proteins;Internal cavity;MD simulation;Nitration
期刊:
Computational Biology and Chemistry
ISSN:
1476-9271
年:
2014
卷:
52
页码:
60-65
基金类别:
NAMD and VMD were developed by the Theoretical Biophysics Group in the Beckman Institute for Advanced Science and Technology at the University of Illinois at Urbana-Champaign, USA. This work was supported by the National Science Foundation of China (Nos. 31370812 and 11275090 ) and the Scientific Research Foundation for the Returned Overseas Chinese Scholars, State Education Ministry .
机构署名:
本校为第一且通讯机构
院系归属:
化学化工学院
摘要:
Protein nitration is an important post-translational modification regulating protein structure and function, especially for heme proteins. Myoglobin (Mb) is an ideal protein model for investigating the structure and function relationship of heme proteins. With limited structural information available for nitrated heme proteins from experiments, we herein performed a molecular dynamics study of human Mb with successive nitration of Tyr103, Tyr146, Trp7 and Trp14. We made a detailed comparison of protein motions, intramolecular contacts and inter...

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